Automated Electron Microscopy

ITG Technology Development: Automated Electron Microscopy

Publications

"Application of a SQL Database for automated image acquisition and analysis for cryoEM", D. Fellmann, B. Carragher, C.S. Potter, and J. Pulokas, Abstract submitted to M&M2001.
"AUTOMATION FOR CRYO-TEM: FROM SPECIMEN GRID TO 3D MAP", B. Carragher, D. Fellmann, N. Kisseberth, R.A. Milligan^*, C.S. Potter, J. Pulokas and Y. Zhu, Abstract Submitted to M&M2001.
“Automated FILAMENT FINDING AND SELECTION FROM CRYO ELECTRON MICROGRAPHS”, Y. Zhu, B. Carragher and C.S. Potter, Abstract Submitted to M&M2001.
“Automated Very Low Magnification Imaging for TEM”, C.S. Potter, B. Carragher, D. Kriegman and J. Pulokas, Abstract Submitted to M&M2001.
“Automated image acquisition for single particle reconstruction using p97 as the biological sample”, Isabelle Rouiller, James Pulokas, Virginia M. Butel, Ronald A. Milligan, Elizabeth M. Wilson-Kubalek, Clinton S. Potter, and Bridget Carragher, Paper submitted to J. Struct. Bio. 1/2001.
“Perceptual Organization as a Method for Detection and Selection of Filamentous Structures in Highly Noisy Images Acquired by Cryo-electron Microscopy”, Yuanxin Zhu, Bridget Carragher, David Kriegman, and Clinton S. Potter, Paper submitted to ICCV 2001 (The eighth IEEE international conference on computer vision). July 9-12 2001, Vancouver.

"Leginon: An Automated system for acquisition of images from vitreous ice specimens", B. Carragher, N. Kisseberth, D. Kriegman, R.A. Milligan, C.S. Potter, J. Pulokas, and A. Reilein, Journal of Structural Biology 132, pp.33-45 (2000).
“Automated filament selection and targeting for automated microscopy”, C.S. Potter, Talk presented at the Single Particle Workshop, National Center for Macromolecular Imaging, Baylor College of Medicine, Houston TX, April 28-30, 2000.
“AN INTEGRATED SYSTEM FOR TRANSMISSION ELECTRON MICROSCOPY”, B. Carragher, N. Kisseberth, D. Kriegman, R.A. Milligan^*, C.S.Potter, J. Pulokas, and A. Reilein. Abstract accepted MMA 2000.
“AN INTERACTIVE USER INTERFACE FOR AUTOMATED ACQUISITION OF TRANSMISSION ELECTRON MICROGRAPHS”, J. Pulokas, N. Kisseberth, C.S. Potter, and B. Carragher. Abstract accepted MMA 2000.
"An automated system for maintaining liquid nitrogen levels in the Gatan cryostage", S.J. Robinson, G.Fried and J. Pulokas, Abstract accepted MMA 2000.
“Improving the Positional Accuracy of the Goniometer on the Philips CM SeriesTEM”, J. Pulokas, C. Green, N.Kisseberth, C. S. Potter, and B. Carragher, Journal of Structural Biology, 128, 250-256 (2000)
“Leginon: A system for fully automated acquisition of 1000 micrographs a day”, C.S. Potter, H. Chu, B. Frey, C. Green, N. Kisseberth, T.J. Madden, K.L. Miller, K. Nahrstedt, J. Pulokas, A. Reilein, D. Tcheng, D. Weber and B. Carragher, Ultramicroscopy 77 (1999) 153-161.
“Improving the positional accuracy of the goniometer on the Philips CM200 TEM”, J. Pulokas, C. Green, N. Kisseberth, C.S. Potter and B. Carragher, Proceedings Microscopy and Microanalysis 99, August 1-5, 1999, Portland, OR Vol 5 Supplement 2 pp. 348-349 ITG TR 99-001
“Automated acquistion of cryo-electron micrographs”, B. Carragher, N. Jojic, R.A. Milligan,N. Kisseberth, J. Pulokas, C.S. Potter and A. Reilein, Proceedings Microscopy and Microanalysis 99, August 1-5, 1999, Portland, OR Volume 5 Supplement 2 pp.376-377 ITG TR 99-002
A testbed for automated acquisition from a TEM , 14th International Congress on Electron Microscopy, August 30- September 4, 1998, Cancun MX, Vol 1, pp. 259-260
Distributed QoS-aware high performance environment for automated TEM, 7th IEEE Symposium on High Performance and Distributed Computing(HPDC-7), July 28-31 1998, Chicago.
A testbed for automated acquistion from a TEM , Microscopy and Microanalysis '98, July 12-16 1998, Atlanta, pp. 8-9.
“emScope: a toolkit for control and automation of a remote electron microscope”, N. Kisseberth, M. Whittaker, D. Weber, C.S. Potter and B. Carragher, J. Struct. Biology, 120 309-319 (1997)
“emScope: a toolkit for control and automation of a remote electron microscope”, N. Kisseberth, M. Whittaker, D. Weber, C.S. Potter and B. Carragher, Tomography Workshop, Ringberg, Germany, March 16-19, 1997

Imaging Technology Group ITG Home Page Microscopy Suite User Information Calendars Equipment Software Techniques Policies Fees Helpful Links Contacts Visualization Laboratory About User Information Calendars Equipment Software Policies Fees Contacts Technology Development Bugscope Chickscope Remote Microscopy Virtual Microscopy 3D Reconstruction Visualization Web Atlas Publications Technical Reports News Forums Papers Exhibits Image of the Week Gallery Magazine Covers Movies ITG Developed Software ITG in the Media ITG People Search Advanced Search Search Help	ITG Technology Development: Automated Electron Microscopy Publications "Application of a SQL Database for automated image acquisition and analysis for cryoEM", D. Fellmann, B. Carragher, C.S. Potter, and J. Pulokas, Abstract submitted to M&M2001. "AUTOMATION FOR CRYO-TEM: FROM SPECIMEN GRID TO 3D MAP", B. Carragher, D. Fellmann, N. Kisseberth, R.A. Milligan^, C.S. Potter, J. Pulokas and Y. Zhu, Abstract Submitted to M&M2001. “Automated FILAMENT FINDING AND SELECTION FROM CRYO ELECTRON MICROGRAPHS”, Y. Zhu, B. Carragher and C.S. Potter, Abstract Submitted to M&M2001. “Automated Very Low Magnification Imaging for TEM”, C.S. Potter, B. Carragher, D. Kriegman and J. Pulokas, Abstract Submitted to M&M2001. “Automated image acquisition for single particle reconstruction using p97 as the biological sample”, Isabelle Rouiller, James Pulokas, Virginia M. Butel, Ronald A. Milligan, Elizabeth M. Wilson-Kubalek, Clinton S. Potter, and Bridget Carragher, Paper submitted to J. Struct. Bio. 1/2001. “Perceptual Organization as a Method for Detection and Selection of Filamentous Structures in Highly Noisy Images Acquired by Cryo-electron Microscopy”, Yuanxin Zhu, Bridget Carragher, David Kriegman, and Clinton S. Potter, Paper submitted to ICCV 2001 (The eighth IEEE international conference on computer vision). July 9-12 2001, Vancouver. "Leginon: An Automated system for acquisition of images from vitreous ice specimens", B. Carragher, N. Kisseberth, D. Kriegman, R.A. Milligan, C.S. Potter, J. Pulokas, and A. Reilein, Journal of Structural Biology 132, pp.33-45 (2000). “Automated filament selection and targeting for automated microscopy”, C.S. Potter, Talk presented at the Single Particle Workshop, National Center for Macromolecular Imaging, Baylor College of Medicine, Houston TX, April 28-30, 2000. “AN INTEGRATED SYSTEM FOR TRANSMISSION ELECTRON MICROSCOPY”, B. Carragher, N. Kisseberth, D. Kriegman, R.A. Milligan^, C.S.Potter, J. Pulokas, and A. Reilein. Abstract accepted MMA 2000. “AN INTERACTIVE USER INTERFACE FOR AUTOMATED ACQUISITION OF TRANSMISSION ELECTRON MICROGRAPHS”, J. Pulokas, N. Kisseberth, C.S. Potter, and B. Carragher. Abstract accepted MMA 2000. "An automated system for maintaining liquid nitrogen levels in the Gatan cryostage", S.J. Robinson, G.Fried and J. Pulokas, Abstract accepted MMA 2000. “Improving the Positional Accuracy of the Goniometer on the Philips CM SeriesTEM”, J. Pulokas, C. Green, N.Kisseberth, C. S. Potter, and B. Carragher, Journal of Structural Biology, 128, 250-256 (2000) “Leginon: A system for fully automated acquisition of 1000 micrographs a day”, C.S. Potter, H. Chu, B. Frey, C. Green, N. Kisseberth, T.J. Madden, K.L. Miller, K. Nahrstedt, J. Pulokas, A. Reilein, D. Tcheng, D. Weber and B. Carragher, Ultramicroscopy 77 (1999) 153-161. “Improving the positional accuracy of the goniometer on the Philips CM200 TEM”, J. Pulokas, C. Green, N. Kisseberth, C.S. Potter and B. Carragher, Proceedings Microscopy and Microanalysis 99, August 1-5, 1999, Portland, OR Vol 5 Supplement 2 pp. 348-349 ITG TR 99-001 “Automated acquistion of cryo-electron micrographs”, B. Carragher, N. Jojic, R.A. Milligan,N. Kisseberth, J. Pulokas, C.S. Potter and A. Reilein, Proceedings Microscopy and Microanalysis 99, August 1-5, 1999, Portland, OR Volume 5 Supplement 2 pp.376-377 ITG TR 99-002 A testbed for automated acquisition from a TEM , 14th International Congress on Electron Microscopy, August 30- September 4, 1998, Cancun MX, Vol 1, pp. 259-260 Distributed QoS-aware high performance environment for automated TEM, 7th IEEE Symposium on High Performance and Distributed Computing(HPDC-7), July 28-31 1998, Chicago. A testbed for automated acquistion from a TEM , Microscopy and Microanalysis '98, July 12-16 1998, Atlanta, pp. 8-9. “emScope: a toolkit for control and automation of a remote electron microscope”, N. Kisseberth, M. Whittaker, D. Weber, C.S. Potter and B. Carragher, J. Struct. Biology, 120 309-319 (1997) “emScope: a toolkit for control and automation of a remote electron microscope”, N. Kisseberth, M. Whittaker, D. Weber, C.S. Potter and B. Carragher, Tomography Workshop, Ringberg, Germany, March 16-19, 1997
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