ITG Journal Articles and Conference Abstracts

2005

Hibbs, A., MacDonald, G. and Garsha, K. "Practical Confocal Microscopy" in Handbook of Biological Confocal Microscopy, Jim Pawley, Ed. (In Press). 2005.

2004

K. Garsha. "Enabling high precision nonlinear 3-dimensional photo-processing of premeditated designs on a conventional multiphoton imaging system." in Multiphoton Microscopy in the Biomedical Sciences IV, Ammasi Periasamy, Peter T. So, Eds. Proceedings of SPIE Vol. 5323, pp. 279-290. 2004.

2003

Nardi, J., Pilas, B., Ujhelyi, E., Garsha, K., and Kanost, M.R. "Hematopoietic organs of Manduca sexta and hemocyte lineages." Dev. Genes Evol. 213:477-491. 2003.

K. Garsha. "The effects of femtosecond pulse dispersion pre-compensation on average power damage thresholds for live cell imaging: implications for the relative roles of linear and nonlinear absorption in live cell imaging" in Multiphoton Microscopy in the Biomedical Sciences III, Ammasi Periasamy, Peter T. So, Eds. Proceedings of SPIE Vol. 4963, 134-142. 2003.

2002

Glenn Fried, Stanislav Rubakhin, Jonathan Sweedler, "Atomic Force Microscopy as a Tool for the Investigation of Cellular Cytoplasmic Membrane Dynamics",  Microsc. Microanal. 8 (Suppl. 2), 2002.

Scott J. Robinson, Glenn Fried, and Aman Haque, "MEMS Stage and Piezoelectric Motor-controlled TEM Holder for Quantitative in-situ Testing of Thin Film Specimens", Microsc. Microanal. 8 (Suppl. 2), 2002.

K. Garsha and G. Fried, "Optimization of Illumination Pulse Duration Increases Flexibility and Performance of Multiphoton Microscopes for Multidisciplinary Research Environments", Microsc. Microanal. 8 (Suppl. 2), 2002.

Karin M. Balss, Glenn A. Fried,  and Paul W. Bohn, "Chemically Selective Force Mapping of Electrochemically Generated Two-Component w-Substituted Alkanethiol Monolayer Gradients by Pulsed-Force-Mode Atomic Force Microscopy", Journal of The Electrochemical Society, 149 (9) C450-C455 (2002).

U. Thakkar, G.A. Fried, B. Grosser, S. Robinson, D. Weber, M. Korb, J. Lee.  "Integrating remote scientific instrumentation in the curriculum to support inquiry:  Case studies in  K-12 and teacher education".  Proceedings of Society for  Information Technology and Teacher Education (pp. 2144-2145).  Norfolk,  VA:  Association for the Advancement of Computing in Education.

2001

G.A. Fried, Y.M. Zhang, P.W. Bohn, "Effect of molecular adsorption at the liquid-metal interface on electronic conductivity: the role of surface morphology", THIN SOLID FILMS,  401, (1-2): 171-178, December 17, 2001

 Karl Garsha, "Concepts, Considerations and Control Experiments for Immunolabeling".  Microscopy Today, November 2001.

Yuanxin Zhu, Bridget Carragher, David Kriegman, and Clinton S. Potter, "Perceptual Organization as a Method for Detection and Selection of Filamentous Structures in Highly Noisy Images Acquired by Cryo-electron Microscopy", Paper submitted to ICCV 2001 (The eighth IEEE international conference on computer vision). July 9-12, 2001, Vancouver.

2000

C.S. Potter, B. Carragher, L. Carroll, C. Conway, B. Grosser, J. Hanlon, N. Kisseberth, S. Robinson, D. Stone and U. Thakkar, "BUGSCOPE:  The second year of a sustainable remote microscope project for K-12 education outreach", Invited M & M submission reprinted from Microscopy Today, In press.

C.S. Potter, B. Carragher, L. Carroll, C. Conway, B. Grosser, J. Hanlon, N. Kisseberth, S. Robinson, U. Thakkar and D. Weber, "Bugscope: A practical approach to providing remote microscopy for science education outreach", Microscopy and Microanalysis, 7 (3), 249-252.

B. Carragher, N. Kisseberth, D. Kriegman, R.A. Milligan, C.S. Potter, J. Pulokas and A. Reilein, "Leginon: An Automated system for acquisition of images from vitreous ice specimens", J. Struct. Bio., 132, 33-45 (2000) .

U. Thakkar, B. Carragher, L. Carroll, C. Conway, B. Grosser, N. Kisseberth, C.S. Potter, S. Robinson, J. Sinn-Hanlon, D. Stone and D. Weber, “Formative Evaluation of Bugscope: A sustainable world wide laboratory for K-12”, Paper prepared for the Annual Meeting of American Educational Research Association, Special Interest Group on Advanced Technologies for Learning, New Orleans, LA, April 24-28, 2000.

C. S. Potter, “Automated filament selection and targeting for automated microscopy” Talk presented at the Single Particle Workshop, National Center for Macromolecular Imaging, Baylor College of Medicine, Houston TX, April 28-30, 2000.

C.S. Potter, B. Carragher, L. Carroll, C. Conway*,  B. Grosser, J. Hanlon, N. Kisseberth, S. Robinson, P. D. Stone*, U. Thakkar** and D. Weber, “Bugscope: A Sustainable Remote Microscope Project for K-12”, International Conference of the Learning Sciences 2000 (ICLS 2000).Paper for the panel on “Participatory science via the Internet”, pp.379-380, 14-17 June 2000, Ann Arbor, Michigan.

B. Carragher, N. Kisseberth, D. Kriegman, R.A. Milligan^*, C.S. Potter, J. Pulokas, and A. Reilein, “An Integrated System for Transmission Electron Microscopy” Abstract accepted MMA 2000.

J. Pulokas, N. Kisseberth, C.S. Potter, and B. Carragher “An Interactive User Interface for Automated Acquision of Transmission Electron Micrographs” Abstract accepted MMA 2000.

C.S. Potter, B. Carragher, L. Carroll, C. Conway*, B. Grosser, J. Hanlon, N. Kisseberth, S. Robinson, D. Stone*, U. Thakkar** and D. Weber “Bugscope: The Second Year of a Sustainable Remote Microscope Project for K-12 Education Outreach” Abstract accepted MMA 2000. Invited

G.A. Fried and  P.W. Bohn “Imaging Ultrathin Organic Films on the Nanometer Level Using Surface Plasmons” Abstract accepted MMA 2000.

G.A. Fried, K. Balss, P.W. Bohn “Imaging Electrochemical Controlled Chemical Gradients Using Pulsed Force Mode Atomic Force Microscopy” Abstract accepted MMA 2000.

J. Pulokas, C. Green, N.Kisseberth, C. S. Potter, and B. Carragher “Improving the Positional Accuracy of the Goniometer on the Philips CM Series TEM” Journal of Structural Biology, 128, 250-256 (2000)

1999

Carragher, B. and C.S. Potter “The World Wide Laboratory: Remote and Automated Access to Imaging Instrumentation.” (1999) Impact of Advances in Computing and Communications in Chemical Sciences and Technology, National Academy Press, pp. 141-153.

Carragher, B., N. Jojic, R.A. Milligan, N. Kisseberth, J. Pulokas, C.S. Potter and A. Reilein, (1999)  “Automated acquisition of cryo-electron micrographs.” Microscopy and Microanalysis 99, Volume 5, Supplement 2, pp.376-377.

Kisseberth, N., G. Brauer, B. Grosser, C.S. Potter and B. Carragher “JavaScope: A Web-Based TEM Control Interface.” (1999) J. Struct. Bio., 125, pp. 229-234.

Potter, C.S., B. Carragher, M. Ceperley, C. Conway, B. Grosser, J. Hanlon, C. Hoyer, N. Kisseberth, S. Robinson, J. Sapp, P. Soskin, D. Stone, U. Thakkar and D. Weber “Bugscope: A sustainable web-based telemicroscopy project for K-12 Classrooms.” (1999) Proceedings Microscopy and Microanalysis 99, pp.514-515.

Potter, C.S., H. Chu, B. Frey, C. Green, N. Kisseberth, T.J. Madden, K.L. Miller, K. Nahrstedt, J. Pulokas, A. Reilein, D. Tcheng, D. Weber and B. Carragher “Leginon: A System for Fully Automated Acquisition of 1000 Micrographs a Day.” (1998) Ultramicroscopy, 77 (1999), pp. 153-161.

Pulokas, J., C. Green, N. Kisseberth, C.S. Potter and B. Carragher, (2000) “Improving the Positional Accuracy of the Goniometer on the Philips CM Series TEM.” J. Struct. Bio., In Press.

Rice, S., A.W. Lin, D. Safer, C.L. Hart, N. Naber, B.O. Carragher, S.M. Cain, E. Pechatnikova, E.M.Wilson-Kubalek, M. Whittaker, E. Pate, R. Cooke, E.W. Taylor, R.A. Milligan and R.D. Vale “A structural change in the kinesin motor protein that drives motility.” ,  (1999) Nature, 402, pp. 778-784.

Wells, A.L., W. Lin, L. Chen, D. Safer, S.M. Cain, T. Hasson, B.O. Carragher, R.A. Milligan and H.L. Sweeney “Myosin VI is an actin-based motor that moves backwards.” , (1999) Nature, 401, pp. 505-508.